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yod1 YOD1 deubiquitinase [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109635581, updated on 14-Mar-2024

Summary

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Gene symbol
yod1
Gene description
YOD1 deubiquitinase
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859667.1 (5594382..5599769)

NW_017859667.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 1a Neighboring gene TAFA chemokine like family member 3a Neighboring gene uncharacterized LOC109635549 Neighboring gene kinesin family member 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859667.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase OTU1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859667.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    5594382..5599769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020096862.1 → XP_019952421.1  ubiquitin thioesterase OTU1

    Conserved Domains (1) summary
    COG5539
    Location:25 → 300
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

  2. XM_020096864.1 → XP_019952423.1  ubiquitin thioesterase OTU1

    Conserved Domains (1) summary
    COG5539
    Location:25 → 300
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

  3. XM_020096863.1 → XP_019952422.1  ubiquitin thioesterase OTU1

    Conserved Domains (1) summary
    COG5539
    Location:25 → 300
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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