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dtx1 deltex E3 ubiquitin ligase 1 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109633854, updated on 9-Nov-2023

Summary

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Gene symbol
dtx1
Gene description
deltex E3 ubiquitin ligase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859662.1 (3915739..3957759, complement)

NW_017859662.1Genomic Context describing neighboring genes Neighboring gene DiGeorge syndrome critical region gene 6 Neighboring gene RAS protein activator like 1 Neighboring gene solute carrier family 20 member 1a Neighboring gene synapsin I

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859662.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase DTX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859662.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    3915739..3957759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020093996.1 → XP_019949555.1  E3 ubiquitin-protein ligase DTX1 isoform X3

    Conserved Domains (4) summary
    smart00678
    Location:26 → 102
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd09633
    Location:492 → 624
    Deltex_C; Domain found at the C-terminus of deltex-like
    pfam02825
    Location:106 → 160
    WWE; WWE domain
    cd16671
    Location:420 → 488
    RING-H2_DTX1_4; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase deltex1 (DTX1), deltex4 (DTX4), and similar proteins

  2. XM_020093995.1 → XP_019949554.1  E3 ubiquitin-protein ligase DTX1 isoform X2

    Conserved Domains (4) summary
    smart00678
    Location:26 → 102
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd09633
    Location:499 → 631
    Deltex_C; Domain found at the C-terminus of deltex-like
    pfam02825
    Location:106 → 160
    WWE; WWE domain
    cd16671
    Location:427 → 495
    RING-H2_DTX1_4; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase deltex1 (DTX1), deltex4 (DTX4), and similar proteins

  3. XM_020093994.1 → XP_019949553.1  E3 ubiquitin-protein ligase DTX1 isoform X1

    Conserved Domains (4) summary
    smart00678
    Location:26 → 102
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd09633
    Location:502 → 634
    Deltex_C; Domain found at the C-terminus of deltex-like
    pfam02825
    Location:106 → 160
    WWE; WWE domain
    cd16671
    Location:430 → 498
    RING-H2_DTX1_4; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase deltex1 (DTX1), deltex4 (DTX4), and similar proteins
Nucleotide Protein
Heading Accession and Version

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