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mtcl2 microtubule crosslinking factor 2 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109630973, updated on 14-Mar-2024

Summary

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Gene symbol
mtcl2
Gene description
microtubule crosslinking factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
soga1
Orthologs
human zebrafish all
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Genomic context

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See mtcl2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859655.1 (6135291..6217723, complement)

NW_017859655.1Genomic Context describing neighboring genes Neighboring gene bassoon presynaptic cytomatrix protein a Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene oxysterol-binding protein-related protein 2-like Neighboring gene L-rhamnose-binding lectin SML-like Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 16 Neighboring gene caspase 9, apoptosis-related cysteine peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859655.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SOGA1
Names
suppressor of glucose, autophagy associated 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859655.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    6135291..6217723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020089520.1 → XP_019945079.1  protein SOGA1 isoform X2

    Conserved Domains (4) summary
    pfam11365
    Location:482 → 576
    SOGA; Protein SOGA
    pfam14818
    Location:1282 → 1314
    DUF4482; Domain of unknown function (DUF4482)
    cl25732
    Location:318 → 664
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28033
    Location:30 → 247
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_020089521.1 → XP_019945080.1  protein SOGA1 isoform X3

    Conserved Domains (4) summary
    pfam11365
    Location:482 → 576
    SOGA; Protein SOGA
    pfam14818
    Location:1256 → 1293
    DUF4482; Domain of unknown function (DUF4482)
    cl25732
    Location:318 → 664
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28033
    Location:30 → 247
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  3. XM_020089519.1 → XP_019945078.1  protein SOGA1 isoform X1

    Conserved Domains (4) summary
    pfam11365
    Location:482 → 576
    SOGA; Protein SOGA
    pfam14818
    Location:1283 → 1315
    DUF4482; Domain of unknown function (DUF4482)
    cl25732
    Location:318 → 664
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28033
    Location:30 → 247
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
Heading Accession and Version

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