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spast spastin [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109630622, updated on 14-Mar-2024

Summary

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Gene symbol
spast
Gene description
spastin
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See spast in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859642.1 (7474606..7478627, complement)

NW_017859642.1Genomic Context describing neighboring genes Neighboring gene vitrin-like Neighboring gene opsin 6, group member a Neighboring gene mediator of cell motility 1 Neighboring gene MKKS centrosomal shuttling protein Neighboring gene SLX4 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859642.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spastin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859642.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    7474606..7478627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020088908.1 → XP_019944467.1  spastin

    Conserved Domains (2) summary
    COG0464
    Location:198 → 456
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    cd02679
    Location:17 → 96
    MIT_spastin; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be ...
Nucleotide Protein
Heading Accession and Version

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