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jmjd1cb jumonji domain containing 1Cb [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109627000, updated on 14-Mar-2024

Summary

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Gene symbol
jmjd1cb
Gene description
jumonji domain containing 1Cb
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
jmjd1c
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859648.1 (1582715..1692222, complement)

NW_017859648.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 6 Neighboring gene cytochrome P450 26A1 Neighboring gene nuclear receptor binding factor 2b Neighboring gene NHL repeat containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859648.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable JmjC domain-containing histone demethylation protein 2C
Names
jumonji domain containing 1C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859648.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    1582715..1692222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020083306.1 → XP_019938865.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

    Conserved Domains (3) summary
    cl21464
    Location:2763 → 2862
    cupin_like; Conserved domain found in cupin and related proteins
    cl26464
    Location:777 → 1263
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:1936 → 2099
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_020083307.1 → XP_019938866.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    Conserved Domains (3) summary
    cl21464
    Location:2574 → 2673
    cupin_like; Conserved domain found in cupin and related proteins
    cl26464
    Location:588 → 1074
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:1747 → 1910
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
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