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FOXA2 forkhead box A2 [ Bos indicus (zebu cattle) ]

Gene ID: 109568051, updated on 14-Mar-2024

Summary

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Gene symbol
FOXA2
Gene description
forkhead box A2
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See FOXA2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 13 NC_032662.1 (41722432..41725147, complement)

Chromosome 13 - NC_032662.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109567785 Neighboring gene uncharacterized LOC109568050 Neighboring gene proteasome subunit beta type-6 pseudogene Neighboring gene transfer RNA serine (anticodon GGA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032662.1 Chromosome 13 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 3-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032662.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    41722432..41725147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019973263.1 → XP_019828822.1  hepatocyte nuclear factor 3-beta

    UniProtKB/TrEMBL
    A0A6P5CVI8
    Conserved Domains (3) summary
    smart00339
    Location:129 → 217
    FH; FORKHEAD
    pfam08430
    Location:1 → 128
    Forkhead_N; Forkhead N-terminal region
    pfam09354
    Location:348 → 420
    HNF_C; HNF3 C-terminal domain
Nucleotide Protein
Heading Accession and Version

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