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PTX3 pentraxin 3 [ Bos indicus (zebu cattle) ]

Gene ID: 109558982, updated on 14-Mar-2024

Summary

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Gene symbol
PTX3
Gene description
pentraxin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 1 NC_032650.1 (112163812..112169760, complement)

Chromosome 1 - NC_032650.1Genomic Context describing neighboring genes Neighboring gene SHOX homeobox 2 Neighboring gene THAP domain-containing protein 7 pseudogene Neighboring gene uncharacterized LOC109558991 Neighboring gene ventricular zone expressed PH domain containing 1 Neighboring gene cyclin L1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032650.1 Chromosome 1 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables complement component C1q complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentraxin-related protein PTX3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032650.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    112163812..112169760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019960356.1 → XP_019815915.1  pentraxin-related protein PTX3

    UniProtKB/TrEMBL
    A0A6P5BSK2
    Conserved Domains (2) summary
    cl22861
    Location:176 → 381
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl28146
    Location:74 → 143
    PRK09039; hypothetical protein; Validated
Nucleotide Protein
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