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SLC39A1 solute carrier family 39 member 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109554451, updated on 14-Mar-2024

Summary

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Gene symbol
SLC39A1
Gene description
solute carrier family 39 member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 3 NC_032652.1 (17856061..17860162)

Chromosome 3 - NC_032652.1Genomic Context describing neighboring genes Neighboring gene jumping translocation breakpoint Neighboring gene cAMP responsive element binding protein 3 like 4 Neighboring gene CREB regulated transcription coactivator 2 Neighboring gene DENN domain containing 4B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032652.1 Chromosome 3 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene, 2012 Feb 1. PMID 22134011

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in zinc ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc transporter ZIP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032652.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    17856061..17860162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019954971.1 → XP_019810530.1  zinc transporter ZIP1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5BK62
    Conserved Domains (1) summary
    pfam02535
    Location:43 → 319
    Zip; ZIP Zinc transporter

  2. XM_019954965.1 → XP_019810524.1  zinc transporter ZIP1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5BKA0
    Conserved Domains (1) summary
    pfam02535
    Location:66 → 342
    Zip; ZIP Zinc transporter
Nucleotide Protein
Heading Accession and Version

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