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chaf1a chromatin assembly factor 1, subunit A (p150) [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109532156, updated on 14-Mar-2024

Summary

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Gene symbol
chaf1a
Gene description
chromatin assembly factor 1, subunit A (p150)
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017806175.1 (2834424..2865689, complement)

NW_017806175.1Genomic Context describing neighboring genes Neighboring gene UDP-N-acetylglucosamine pyrophosphorylase 1 Neighboring gene UBX domain protein 6 Neighboring gene uncharacterized LOC109532387 Neighboring gene uncharacterized LOC109532386 Neighboring gene antihemorrhagic factor BJ46a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017806175.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CAF-1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromatin assembly factor 1 subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017806175.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    2834424..2865689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019896828.1 → XP_019752387.1  chromatin assembly factor 1 subunit A isoform X3

    Conserved Domains (4) summary
    pfam11600
    Location:236 → 392
    CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
    pfam12253
    Location:468 → 511
    CAF1A; Chromatin assembly factor 1 subunit A
    pfam15539
    Location:577 → 846
    CAF1-p150_C2; CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
    pfam15557
    Location:1 → 99
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA

  2. XM_019896826.1 → XP_019752385.1  chromatin assembly factor 1 subunit A isoform X1

    Conserved Domains (4) summary
    pfam11600
    Location:253 → 409
    CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
    pfam12253
    Location:485 → 528
    CAF1A; Chromatin assembly factor 1 subunit A
    pfam15539
    Location:594 → 863
    CAF1-p150_C2; CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
    pfam15557
    Location:23 → 121
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA

  3. XM_019896827.1 → XP_019752386.1  chromatin assembly factor 1 subunit A isoform X2

    Conserved Domains (4) summary
    pfam11600
    Location:253 → 409
    CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
    pfam12253
    Location:485 → 528
    CAF1A; Chromatin assembly factor 1 subunit A
    pfam15539
    Location:594 → 863
    CAF1-p150_C2; CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
    pfam15557
    Location:23 → 121
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA
Nucleotide Protein
Heading Accession and Version

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