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hoxc6a homeobox C6a [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109531362, updated on 14-Mar-2024

Summary

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Gene symbol
hoxc6a
Gene description
homeobox C6a
See related
Ensembl:ENSHCOG00000019575
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Also known as
hoxc6
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017806160.1 (1020210..1021921)

NW_017806160.1Genomic Context describing neighboring genes Neighboring gene homeobox protein Hox-C10a-like Neighboring gene homeobox C9a Neighboring gene homeobox C8a Neighboring gene homeobox C5a Neighboring gene homeobox C4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017806160.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-C6
Names
homeobox C6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017806160.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    1020210..1021921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019895630.1 → XP_019751189.1  homeobox protein Hox-C6 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YR08
    Related
    ENSHCOP00000015887.1, ENSHCOT00000023926.1
    Conserved Domains (2) summary
    pfam00046
    Location:149 → 201
    Homeobox; Homeobox domain
    cl27820
    Location:116 → 224
    Abdominal-A; Homeobox protein

  2. XM_019895631.1 → XP_019751190.1  homeobox protein Hox-C6 isoform X2

    Conserved Domains (1) summary
    pfam00046
    Location:148 → 200
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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