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ubc ubiquitin C [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109531088, updated on 9-Nov-2023

Summary

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Gene symbol
ubc
Gene description
ubiquitin C
See related
Ensembl:ENSHCOG00000012106
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017806158.1 (1451323..1455206)

NW_017806158.1Genomic Context describing neighboring genes Neighboring gene clathrin, heavy chain a (Hc) Neighboring gene NHERF family PDZ scaffold protein 4b Neighboring gene acidic mammalian chitinase-like Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g Neighboring gene finTRIM family, member 82

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017806158.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyubiquitin-C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017806158.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    1451323..1455206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019895163.1 → XP_019750722.1  polyubiquitin-C isoform X9

    Conserved Domains (2) summary
    cd01803
    Location:229 → 304
    Ubiquitin
    cl00155
    Location:77 → 152
    UBQ; Ubiquitin-like proteins

  2. XM_019895155.1 → XP_019750714.1  polyubiquitin-C isoform X1

    UniProtKB/TrEMBL
    A0A3Q3DDY5
    Related
    ENSHCOP00000009639.1, ENSHCOT00000015814.1
    Conserved Domains (2) summary
    cd01803
    Location:913 → 988
    Ubiquitin
    cl00155
    Location:685 → 760
    UBQ; Ubiquitin-like proteins

  3. XM_019895156.1 → XP_019750715.1  polyubiquitin-C isoform X2

    Conserved Domains (2) summary
    cd01803
    Location:837 → 912
    Ubiquitin
    cl00155
    Location:685 → 760
    UBQ; Ubiquitin-like proteins

  4. XM_019895158.1 → XP_019750717.1  polyubiquitin-C isoform X4

    Conserved Domains (1) summary
    cd01803
    Location:761 → 836
    Ubiquitin

  5. XM_019895161.1 → XP_019750720.1  polyubiquitin-C isoform X7

    Conserved Domains (1) summary
    cd01803
    Location:533 → 608
    Ubiquitin

  6. XM_019895157.1 → XP_019750716.1  polyubiquitin-C isoform X3

    Conserved Domains (2) summary
    cd01803
    Location:837 → 912
    Ubiquitin
    cl00155
    Location:685 → 760
    UBQ; Ubiquitin-like proteins

  7. XM_019895159.1 → XP_019750718.1  polyubiquitin-C isoform X5

    Conserved Domains (1) summary
    cd01803
    Location:761 → 836
    Ubiquitin

  8. XM_019895160.1 → XP_019750719.1  polyubiquitin-C isoform X6

    Conserved Domains (2) summary
    cd01803
    Location:761 → 836
    Ubiquitin
    cl00155
    Location:609 → 684
    UBQ; Ubiquitin-like proteins

  9. XM_019895162.1 → XP_019750721.1  polyubiquitin-C isoform X8

    Conserved Domains (1) summary
    cd01803
    Location:685 → 760
    Ubiquitin
Nucleotide Protein
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