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scaf11 SR-related CTD-associated factor 11 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109528802, updated on 14-Mar-2024

Summary

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Gene symbol
scaf11
Gene description
SR-related CTD-associated factor 11
See related
Ensembl:ENSHCOG00000010029
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805987.1 (420064..427975)

NW_017805987.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2 like 3 Neighboring gene AT rich interactive domain 2 (ARID, RFX-like) Neighboring gene zinc finger protein 420-like Neighboring gene solute carrier family 38 member 2 Neighboring gene solute carrier family 38 member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805987.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SCAF11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805987.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    420064..427975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019891780.1 → XP_019747339.1  protein SCAF11 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YW95
    Related
    ENSHCOP00000022384.1, ENSHCOT00000001199.1
    Conserved Domains (3) summary
    pfam08236
    Location:1115 → 1186
    SRI; SRI (Set2 Rpb1 interacting) domain
    cl17238
    Location:23 → 67
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl26761
    Location:338 → 537
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  2. XM_019891783.1 → XP_019747342.1  protein SCAF11 isoform X2

    Conserved Domains (3) summary
    pfam08236
    Location:1113 → 1184
    SRI; SRI (Set2 Rpb1 interacting) domain
    cl17238
    Location:23 → 65
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl26761
    Location:336 → 535
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  3. XM_019891781.1 → XP_019747340.1  protein SCAF11 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YW95
    Conserved Domains (3) summary
    pfam08236
    Location:1115 → 1186
    SRI; SRI (Set2 Rpb1 interacting) domain
    cl17238
    Location:23 → 67
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl26761
    Location:338 → 537
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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