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grhl1 grainyhead-like transcription factor 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109526132, updated on 14-Mar-2024

Summary

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Gene symbol
grhl1
Gene description
grainyhead-like transcription factor 1
See related
Ensembl:ENSHCOG00000015842
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805826.1 (890024..911985)

NW_017805826.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 17a Neighboring gene isoamyl acetate hydrolyzing esterase 1 (putative) Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta Neighboring gene uncharacterized LOC109526125 Neighboring gene Kruppel-like factor 11b Neighboring gene dynein axonemal assembly factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805826.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
grainyhead-like protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805826.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    890024..911985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019887204.1 → XP_019742763.1  grainyhead-like protein 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Y6T5, A0A3Q2ZGY3
    Related
    ENSHCOP00000025573.1, ENSHCOT00000019879.1
    Conserved Domains (1) summary
    pfam04516
    Location:246 → 437
    CP2; CP2 transcription factor

  2. XM_019887205.1 → XP_019742764.1  grainyhead-like protein 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q2Y6T5
    Conserved Domains (1) summary
    pfam04516
    Location:246 → 435
    CP2; CP2 transcription factor

  3. XM_019887206.1 → XP_019742765.1  grainyhead-like protein 1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A3Q2Y6T5
    Related
    ENSHCOP00000012738.1, ENSHCOT00000019855.1
    Conserved Domains (1) summary
    pfam04516
    Location:198 → 389
    CP2; CP2 transcription factor
Nucleotide Protein
Heading Accession and Version

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