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srp54 signal recognition particle 54 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109520910, updated on 14-Mar-2024

Summary

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Gene symbol
srp54
Gene description
signal recognition particle 54
See related
Ensembl:ENSHCOG00000021127
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017804848.1 (480082..486145, complement)

NW_017804848.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 14A Neighboring gene Sec23 homolog A, coat complex II component Neighboring gene cerebellin-1-like Neighboring gene uncharacterized LOC109520896 Neighboring gene autophagy related 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017804848.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endoplasmic reticulum signal peptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal recognition particle 54 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017804848.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    480082..486145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019878508.1 → XP_019734067.1  signal recognition particle 54 kDa protein

    UniProtKB/TrEMBL
    A0A3Q2X9R4, A0A3Q2XJJ6
    Related
    ENSHCOP00000000096.1, ENSHCOT00000014358.1
    Conserved Domains (1) summary
    TIGR01425
    Location:2 → 430
    SRP54_euk; signal recognition particle protein SRP54

  2. XM_019878516.1 → XP_019734075.1  signal recognition particle 54 kDa protein

    UniProtKB/TrEMBL
    A0A3Q2X9R4, A0A3Q2XJJ6
    Related
    ENSHCOP00000000092.1, ENSHCOT00000014361.1
    Conserved Domains (1) summary
    TIGR01425
    Location:2 → 430
    SRP54_euk; signal recognition particle protein SRP54
Nucleotide Protein
Heading Accession and Version

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