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dnajc6 DnaJ (Hsp40) homolog, subfamily C, member 6 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109519036, updated on 14-Mar-2024

Summary

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Gene symbol
dnajc6
Gene description
DnaJ (Hsp40) homolog, subfamily C, member 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805467.1 (4636937..4674651, complement)

NW_017805467.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109519003 Neighboring gene leucine rich adaptor protein 1 Neighboring gene leptin receptor-like Neighboring gene leptin receptor-like Neighboring gene adenylate kinase 4 Neighboring gene Janus kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805467.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle uncoating IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative tyrosine-protein phosphatase auxilin
Names
DnaJ heat shock protein family (Hsp40) member C6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805467.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    4636937..4674651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019875301.1 → XP_019730860.1  putative tyrosine-protein phosphatase auxilin isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YNF4
    Conserved Domains (4) summary
    cd06257
    Location:912 → 953
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    pfam10409
    Location:280 → 418
    PTEN_C2; C2 domain of PTEN tumor-suppressor protein
    cl21483
    Location:183 → 256
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cl26464
    Location:497 → 815
    Atrophin-1; Atrophin-1 family

  2. XM_019875303.1 → XP_019730862.1  putative tyrosine-protein phosphatase auxilin isoform X3

    UniProtKB/TrEMBL
    A0A3Q2YNF4
    Conserved Domains (4) summary
    cd06257
    Location:850 → 891
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    pfam10409
    Location:218 → 356
    PTEN_C2; C2 domain of PTEN tumor-suppressor protein
    cl21483
    Location:121 → 194
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cl26464
    Location:435 → 753
    Atrophin-1; Atrophin-1 family

  3. XM_019875304.1 → XP_019730863.1  putative tyrosine-protein phosphatase auxilin isoform X3

    UniProtKB/TrEMBL
    A0A3Q2YNF4
    Conserved Domains (4) summary
    cd06257
    Location:850 → 891
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    pfam10409
    Location:218 → 356
    PTEN_C2; C2 domain of PTEN tumor-suppressor protein
    cl21483
    Location:121 → 194
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cl26464
    Location:435 → 753
    Atrophin-1; Atrophin-1 family

  4. XM_019875302.1 → XP_019730861.1  putative tyrosine-protein phosphatase auxilin isoform X2

    UniProtKB/TrEMBL
    A0A3Q2YNF4
    Conserved Domains (5) summary
    cd06257
    Location:887 → 928
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    pfam10409
    Location:280 → 418
    PTEN_C2; C2 domain of PTEN tumor-suppressor protein
    cl21483
    Location:183 → 256
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cl25496
    Location:501 → 800
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl26317
    Location:455 → 624
    Adaptin_N; Adaptin N terminal region
Nucleotide Protein
Heading Accession and Version

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