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spast spastin [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109516275, updated on 14-Mar-2024

Summary

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Gene symbol
spast
Gene description
spastin
See related
Ensembl:ENSHCOG00000010925
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805277.1 (3476285..3480690)

NW_017805277.1Genomic Context describing neighboring genes Neighboring gene steroid-5-alpha-reductase, alpha polypeptide 2b Neighboring gene mediator of cell motility 1 Neighboring gene opsin 6, group member a Neighboring gene vitrin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805277.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spastin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805277.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    3476285..3480690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019870697.1 → XP_019726256.1  spastin

    UniProtKB/TrEMBL
    A0A3Q2XUG8
    Related
    ENSHCOP00000008638.1, ENSHCOT00000025496.1
    Conserved Domains (2) summary
    COG0464
    Location:193 → 463
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    cd02679
    Location:17 → 95
    MIT_spastin; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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