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gli1 GLI family zinc finger 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109510611, updated on 14-Mar-2024

Summary

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Gene symbol
gli1
Gene description
GLI family zinc finger 1
See related
Ensembl:ENSHCOG00000001116
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017842058.1 (641436..737098)

NW_017842058.1Genomic Context describing neighboring genes Neighboring gene R3H domain containing 2 Neighboring gene inhibin beta B chain-like Neighboring gene zinc finger E-box-binding homeobox 2-like Neighboring gene Rho GTPase activating protein 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017842058.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein GLI1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017842058.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    641436..737098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019861034.1 → XP_019716593.1  zinc finger protein GLI1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2XAB3
    Related
    ENSHCOP00000000317.1, ENSHCOT00000013971.1
    Conserved Domains (3) summary
    COG5189
    Location:382 → 472
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    COG5236
    Location:277 → 544
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:355 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_019861035.1 → XP_019716594.1  zinc finger protein GLI1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2XAB3
    Related
    ENSHCOP00000000320.1, ENSHCOT00000013974.1
    Conserved Domains (3) summary
    COG5189
    Location:381 → 471
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    COG5236
    Location:276 → 543
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:354 → 379
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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