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pcdh7b protocadherin 7b [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109508485, updated on 14-Mar-2024

Summary

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Gene symbol
pcdh7b
Gene description
protocadherin 7b
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Also known as
pcdh7
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017808403.1 (1391310..1515631, complement)

NW_017808403.1Genomic Context describing neighboring genes Neighboring gene structure-specific endonuclease subunit slx1-like Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 Neighboring gene uncharacterized LOC109508487 Neighboring gene uncharacterized LOC109508405 Neighboring gene stromal interaction molecule 2b Neighboring gene phosphatidylinositol 3-kinase, catalytic subunit type 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017808403.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-7
Names
protocadherin 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017808403.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    1391310..1515631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019858506.1 → XP_019714065.1  protocadherin-7

    UniProtKB/TrEMBL
    A0A3Q2Y779
    Conserved Domains (2) summary
    cd11304
    Location:505 → 599
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:806 → 1015
    Protocadherin
Nucleotide Protein
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