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PRPF18 pre-mRNA processing factor 18 [ Gavialis gangeticus (Gharial) ]

Gene ID: 109292203, updated on 14-Mar-2024

Summary

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Gene symbol
PRPF18
Gene description
pre-mRNA processing factor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavialis gangeticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Gavialidae; Gavialinae; Gavialis
Orthologs
human mouse all
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Genomic context

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See PRPF18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current GavGan_comp1 (GCF_001723915.1) Unplaced Scaffold NW_017729008.1 (31138566..31167299, complement)

NW_017729008.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109292206 Neighboring gene FERM domain containing 4A Neighboring gene uncharacterized LOC109292205 Neighboring gene uncharacterized LOC109292204 Neighboring gene BEN domain containing 7 Neighboring gene uncharacterized LOC109292208

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017729008.1 Unplaced Scaffold Reference GavGan_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gavialis gangeticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GavGan_comp1 Primary Assembly

Genomic

  1. NW_017729008.1 Reference GavGan_comp1 Primary Assembly

    Range
    31138566..31167299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019509540.1 → XP_019365085.1  pre-mRNA-splicing factor 18

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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