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ATG7 autophagy related 7 [ Gavialis gangeticus (Gharial) ]

Gene ID: 109289156, updated on 14-Mar-2024

Summary

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Gene symbol
ATG7
Gene description
autophagy related 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavialis gangeticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Gavialidae; Gavialinae; Gavialis
Orthologs
human mouse all
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Genomic context

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See ATG7 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current GavGan_comp1 (GCF_001723915.1) Unplaced Scaffold NW_017728997.1 (40195978..40586945, complement)

NW_017728997.1Genomic Context describing neighboring genes Neighboring gene vestigial like family member 4 Neighboring gene uncharacterized LOC109289155 Neighboring gene uncharacterized LOC109288899 Neighboring gene histamine receptor H1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728997.1 Unplaced Scaffold Reference GavGan_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg12 activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Atg8 activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in C-terminal protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein modification by small protein conjugation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like modifier-activating enzyme ATG7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gavialis gangeticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GavGan_comp1 Primary Assembly

Genomic

  1. NW_017728997.1 Reference GavGan_comp1 Primary Assembly

    Range
    40195978..40586945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019505098.1 → XP_019360643.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X5

  2. XM_019505096.1 → XP_019360641.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X3

  3. XM_019505100.1 → XP_019360645.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X7

  4. XM_019505097.1 → XP_019360642.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X4

  5. XM_019505095.1 → XP_019360640.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X2

  6. XM_019505094.1 → XP_019360639.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X1

  7. XM_019505099.1 → XP_019360644.1  ubiquitin-like modifier-activating enzyme ATG7 isoform X6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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