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CLDN1 claudin 1 [ Gavialis gangeticus (Gharial) ]

Gene ID: 109288105, updated on 14-Mar-2024

Summary

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Gene symbol
CLDN1
Gene description
claudin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavialis gangeticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Gavialidae; Gavialinae; Gavialis
Orthologs
human mouse all
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Genomic context

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See CLDN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current GavGan_comp1 (GCF_001723915.1) Unplaced Scaffold NW_017728995.1 (33804205..33817454, complement)

NW_017728995.1Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 2 Neighboring gene uncharacterized LOC109287835 Neighboring gene claudin 16 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene transmembrane protein 207

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728995.1 Unplaced Scaffold Reference GavGan_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gavialis gangeticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GavGan_comp1 Primary Assembly

Genomic

  1. NW_017728995.1 Reference GavGan_comp1 Primary Assembly

    Range
    33804205..33817454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019503478.1 → XP_019359023.1  claudin-1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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