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SYNM synemin [ Panthera pardus (leopard) ]

Gene ID: 109273359, updated on 14-Mar-2024

Summary

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Gene symbol
SYNM
Gene description
synemin
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera pardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM2436296v1 (GCF_024362965.1) Unplaced Scaffold NW_026526810.1 (10246966..10275545)
100 previous assembly PanPar1.0 (GCF_001857705.1) Unplaced Scaffold NW_017619880.1 (5074718..5102803, complement)

NW_026526810.1Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 1 receptor Neighboring gene U6 spliceosomal RNA Neighboring gene tetratricopeptide repeat domain 23 Neighboring gene uncharacterized LOC109273356 Neighboring gene leucine rich repeat containing 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intermediate filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables vinculin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fast-twitch skeletal muscle fiber contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in costamere IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neurofilament cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: synemin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024362965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2436296v1 Primary Assembly

Genomic

  1. NW_026526810.1 Reference ASM2436296v1 Primary Assembly

    Range
    10246966..10275545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053888756.1 → XP_053744731.1  LOW QUALITY PROTEIN: synemin

    UniProtKB/TrEMBL
    A0A9W2UEZ0
Nucleotide Protein
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Gene LinkOut

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