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SYNJ1 synaptojanin 1 [ Panthera pardus (leopard) ]

Gene ID: 109249703, updated on 14-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
Ensembl:ENSPPRG00000023469
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera pardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM2436296v1 (GCF_024362965.1) Unplaced Scaffold NW_026526721.1 (12392572..12483709)
100 previous assembly PanPar1.0 (GCF_001857705.1) Unplaced Scaffold NW_017619926.1 (1740714..1836173, complement)

NW_026526721.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109249706 Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cilia and flagella associated protein 298 Neighboring gene transfer RNA glycine (anticodon UCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024362965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2436296v1 Primary Assembly

Genomic

  1. NW_026526721.1 Reference ASM2436296v1 Primary Assembly

    Range
    12392572..12483709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019420210.2 → XP_019275755.2  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A9W2VKC9

  2. XM_053903128.1 → XP_053759103.1  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A9W2VLA7

  3. XM_053903129.1 → XP_053759104.1  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A9W2VKG8

  4. XM_053903130.1 → XP_053759105.1  synaptojanin-1 isoform X11

    UniProtKB/TrEMBL
    A0A9W2VKE7

  5. XM_053903119.1 → XP_053759094.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A9W2VKF3

  6. XM_053903124.1 → XP_053759099.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A9W2VKA5

  7. XM_053903122.1 → XP_053759097.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A9W2VK56

  8. XM_053903123.1 → XP_053759098.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A9W2VKT2

  9. XM_053903125.1 → XP_053759100.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A9W2VKF4

  10. XM_053903121.1 → XP_053759096.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A9W2VKG0

  11. XM_053903127.1 → XP_053759102.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A9W2VK72

  12. XM_053903120.1 → XP_053759095.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A9W2VKC9
Nucleotide Protein
Heading Accession and Version

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