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LOC109098682 mRNA turnover protein 4 homolog [ Cyprinus carpio (common carp) ]

Gene ID: 109098682, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109098682
Gene description
mRNA turnover protein 4 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Also known as
mrto4
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Genomic context

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Location:
chromosome: B11
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B11 NC_056607.1 (7135506..7140667)
100 previous assembly common carp genome (GCF_000951615.1) 21 NC_031717.1 (11750377..11754760, complement)

Chromosome B11 - NC_056607.1Genomic Context describing neighboring genes Neighboring gene delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial Neighboring gene intermediate filament family orphan 2-like Neighboring gene aflatoxin B1 aldehyde reductase member 4-like Neighboring gene pollen-specific leucine-rich repeat extensin-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA turnover protein 4 homolog
Names
MRT4 homolog, ribosome maturation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056607.1 Reference ASM1834038v1 Primary Assembly

    Range
    7135506..7140667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042733705.1 → XP_042589639.1  mRNA turnover protein 4 homolog

    UniProtKB/TrEMBL
    A0A8C2EK46, A0A9J7ZX29, A0A9Q9WU48
    Conserved Domains (1) summary
    cd05796
    Location:21 → 183
    Ribosomal_P0_like; Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be ...
Nucleotide Protein
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