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polr2i RNA polymerase II subunit I [ Cyprinus carpio (common carp) ]

Gene ID: 109059244, updated on 14-Mar-2024

Summary

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Gene symbol
polr2i
Gene description
RNA polymerase II subunit I
See related
Ensembl:ENSCCRG00000024088
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Orthologs
human zebrafish all
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Genomic context

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See polr2i in Genome Data Viewer
Location:
chromosome: B18
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B18 NC_056614.1 (6669039..6671161)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017538077.1 (85152..87450)

Chromosome B18 - NC_056614.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122140421 Neighboring gene uncharacterized LOC109059231 Neighboring gene peptidoglycan recognition protein 5 Neighboring gene forkhead box G1c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB9
Names
polymerase (RNA) II (DNA directed) polypeptide I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056614.1 Reference ASM1834038v1 Primary Assembly

    Range
    6669039..6671161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042743382.1 → XP_042599316.1  DNA-directed RNA polymerase II subunit RPB9

    UniProtKB/TrEMBL
    A0A9R0AJY3
    Conserved Domains (2) summary
    COG1594
    Location:15 → 121
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:75 → 120
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
Nucleotide Protein
Heading Accession and Version

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