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LOC109053444 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [ Cyprinus carpio (common carp) ]

Gene ID: 109053444, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109053444
Gene description
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
See related
Ensembl:ENSCCRG00000020106
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Also known as
smarcd2
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Genomic context

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See LOC109053444 in Genome Data Viewer
Location:
chromosome: B12
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B12 NC_056608.1 (6870393..6881346, complement)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017537842.1 (1027033..1034050)

Chromosome B12 - NC_056608.1Genomic Context describing neighboring genes Neighboring gene MAGUK p55 subfamily member 2-like Neighboring gene 26S proteasome regulatory subunit 8 Neighboring gene ataxin-7-like protein 3 Neighboring gene band 3 anion exchange protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056608.1 Reference ASM1834038v1 Primary Assembly

    Range
    6870393..6881346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042735127.1 → XP_042591061.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

    UniProtKB/TrEMBL
    A0A8C1R5E9, A0A8C1V7H9, A0A8C2JF00, A0A9J8B0D6
    Conserved Domains (1) summary
    cl38907
    Location:287 → 366
    SWIB-MDM2; SWIB/MDM2 domain family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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