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LOC109051598 ring finger protein 180b [ Cyprinus carpio (common carp) ]

Gene ID: 109051598, updated on 14-Mar-2024

Summary

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Gene symbol
LOC109051598
Gene description
ring finger protein 180b
See related
Ensembl:ENSCCRG00000011085
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Also known as
rnf180; rnf180b
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: B21
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B21 NC_056617.1 (11297719..11301629, complement)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017537772.1 (136877..141109, complement)

Chromosome B21 - NC_056617.1Genomic Context describing neighboring genes Neighboring gene complement component 6 Neighboring gene regulator of G-protein signaling 7-binding protein B-like Neighboring gene 5-hydroxytryptamine receptor 1A-beta-like Neighboring gene uncharacterized LOC122141317

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in norepinephrine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in serotonin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF180
Names
ring finger protein 180

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056617.1 Reference ASM1834038v1 Primary Assembly

    Range
    11297719..11301629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019069103.2 → XP_018924648.1  E3 ubiquitin-protein ligase RNF180

    UniProtKB/TrEMBL
    A0A8C1GL15, A0A9J7YEJ0
    Related
    ENSCCRP00000020104.1
Nucleotide Protein
Heading Accession and Version

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