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Zzz3 zinc finger, ZZ domain containing 3 [ Mus musculus (house mouse) ]

Gene ID: 108946, updated on 8-May-2016
Official Symbol
Zzz3provided by MGI
Official Full Name
zinc finger, ZZ domain containing 3provided by MGI
Primary source
MGI:MGI:1920453
See related
Ensembl:ENSMUSG00000039068 Vega:OTTMUSG00000017427
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
R75514; AA408566; AI481057; AW556059; 3110065C23Rik; 6430567E01Rik
Orthologs
Location:
3; 3 H3
Exon count:
17
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 3 NC_000069.6 (152394486..152462826)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (152058974..152125790)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 73, member A Neighboring gene ubiquitin specific peptidase 33 Neighboring gene adenylate kinase 5 Neighboring gene expressed sequence AI115009 Neighboring gene predicted gene, 32085

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Ada2/Gcn5/Ada3 transcription activator complex IDA
Inferred from Direct Assay
more info
PubMed 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
ZZ-type zinc finger-containing protein 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080755.2NP_001074224.1  ZZ-type zinc finger-containing protein 3 isoform a

    See identical proteins and their annotated locations for NP_001074224.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC111139, AC122529
    Consensus CDS
    CCDS38674.1
    UniProtKB/Swiss-Prot
    Q6KAQ7
    Related
    ENSMUSP00000101706, OTTMUSP00000018988, ENSMUST00000106100, OTTMUST00000042261
    Conserved Domains (4) summary
    smart00717
    Location:662712
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662710
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:828878
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein
  2. NM_001287139.1NP_001274068.1  ZZ-type zinc finger-containing protein 3 isoform b

    See identical proteins and their annotated locations for NP_001274068.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame splice site in the 3' coding region compared to variant 1. The encoded protein (isoform b) is shorter than isoform a.
    Source sequence(s)
    AC111139, BC060614, BY305239
    Consensus CDS
    CCDS71338.1
    UniProtKB/TrEMBL
    D3YTT9
    Related
    ENSMUSP00000087428, OTTMUSP00000018989, ENSMUST00000089982, OTTMUST00000042262
    Conserved Domains (4) summary
    smart00717
    Location:661711
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:661709
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:827877
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p3 C57BL/6J

    Range
    152394486..152462826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500852.2XP_006500915.1  

    See identical proteins and their annotated locations for XP_006500915.1

    UniProtKB/TrEMBL
    D3YTT9
    Conserved Domains (4) summary
    smart00717
    Location:661711
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:661709
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:827877
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein
  2. XM_006500851.2XP_006500914.1  

    See identical proteins and their annotated locations for XP_006500914.1

    UniProtKB/Swiss-Prot
    Q6KAQ7
    Conserved Domains (4) summary
    smart00717
    Location:662712
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662710
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:828878
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein
  3. XM_011239984.1XP_011238286.1  

    Conserved Domains (1) summary
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein
  4. XM_006500854.2XP_006500917.1  

    Conserved Domains (1) summary
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein
  5. XM_006500853.2XP_006500916.1  

    Conserved Domains (1) summary
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein
  6. XM_006500856.2XP_006500919.1  

    See identical proteins and their annotated locations for XP_006500919.1

    UniProtKB/Swiss-Prot
    Q6KAQ7
    Related
    ENSMUSP00000143693, OTTMUSP00000071113, ENSMUST00000200570, OTTMUST00000133918
    Conserved Domains (3) summary
    smart00717
    Location:165215
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:165213
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:331381
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
  7. XM_006500857.2XP_006500920.1  

    See identical proteins and their annotated locations for XP_006500920.1

    UniProtKB/Swiss-Prot
    Q6KAQ7
    Conserved Domains (3) summary
    smart00717
    Location:161211
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:161209
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:327377
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
  8. XM_006500855.2XP_006500918.1  

    Conserved Domains (3) summary
    smart00717
    Location:166216
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:166214
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:332382
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
  9. XM_006500858.2XP_006500921.1  

    See identical proteins and their annotated locations for XP_006500921.1

    UniProtKB/Swiss-Prot
    Q6KAQ7
    Related
    ENSMUSP00000101709, OTTMUSP00000018990, ENSMUST00000106103, OTTMUST00000042263
    Conserved Domains (3) summary
    smart00717
    Location:161211
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:161209
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:327377
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
  10. XM_006500848.2XP_006500911.1  

    See identical proteins and their annotated locations for XP_006500911.1

    UniProtKB/Swiss-Prot
    Q6KAQ7
    Related
    ENSMUSP00000101707, ENSMUST00000106101
    Conserved Domains (4) summary
    smart00717
    Location:662712
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662710
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:828878
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein
  11. XM_006500850.2XP_006500913.1  

    See identical proteins and their annotated locations for XP_006500913.1

    UniProtKB/Swiss-Prot
    Q6KAQ7
    Conserved Domains (4) summary
    smart00717
    Location:662712
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662710
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02341
    Location:828878
    ZZ_ZZZ3; Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
    pfam14757
    Location:343418
    NSP2-B_epitope; Immunogenic region of nsp2 protein of arterivirus polyprotein

RNA

  1. XR_867209.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000025.1 Alternate Mm_Celera

    Range
    158880965..158931207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198416.2: Suppressed sequence

    Description
    NM_198416.2: This RefSeq was permanently suppressed because currently there is support for the protein but not for the transcript.