U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

col4a2 collagen, type IV, alpha 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108899725, updated on 10-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
col4a2
Gene description
collagen, type IV, alpha 2
See related
EnsemblRapid:ENSLCAG00010001817
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG1
Exon count:
49
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG1 NC_066833.1 (15396544..15449673, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366084.1 (281989..335136)

Linkage Group LG1 - NC_066833.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108899729 Neighboring gene NAD(P)HX dehydratase Neighboring gene RAB20, member RAS oncogene family Neighboring gene collagen, type IV, alpha 1 Neighboring gene insulin receptor substrate 2b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-2(IV) chain
Names
collagen type IV alpha 2 chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066833.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    15396544..15449673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051070751.1 → XP_050926708.1  collagen alpha-2(IV) chain isoform X3

    Related
    ENSLCAP00010063853.1, ENSLCAT00010066017.1

  2. XM_051070747.1 → XP_050926704.1  collagen alpha-2(IV) chain isoform X2

    UniProtKB/TrEMBL
    A0A4W6BQQ2
    Related
    ENSLCAP00010003493.2, ENSLCAT00010003591.2

  3. XM_018700340.2 → XP_018555856.1  collagen alpha-2(IV) chain isoform X1

    Related
    ENSLCAP00010003472.2, ENSLCAT00010003570.2

  4. XM_018700339.2 → XP_018555855.1  collagen alpha-2(IV) chain isoform X1

  5. XM_018700341.2 → XP_018555857.1  collagen alpha-2(IV) chain isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.