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rbm22 RNA binding motif protein 22 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108899200, updated on 10-Apr-2024

Summary

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Gene symbol
rbm22
Gene description
RNA binding motif protein 22
See related
EnsemblRapid:ENSLCAG00010004111
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
11
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG8 NC_066840.1 (10857478..10862962, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366013.1 (1041442..1046918)

Linkage Group LG8 - NC_066840.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108899204 Neighboring gene soluble guanylate cyclase 88E Neighboring gene myozenin-2 Neighboring gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b Neighboring gene CD74 molecule, major histocompatibility complex, class II invariant chain a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 1 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor RBM22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066840.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10857478..10862962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018699506.2 → XP_018555022.1  pre-mRNA-splicing factor RBM22

    UniProtKB/TrEMBL
    A0A4W6C4S6
    Related
    ENSLCAP00010008535.1, ENSLCAT00010008730.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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