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LOC108899001 cilia- and flagella-associated protein 69 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108899001, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108899001
Gene description
cilia- and flagella-associated protein 69
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
cfap69
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Genomic context

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Location:
chromosome: LG3
Exon count:
8
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG3 NC_066835.1 (18609480..18613514)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363840.1 (256574..266721, complement)

Linkage Group LG3 - NC_066835.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein dao-5 Neighboring gene lysine-specific histone demethylase 2 Neighboring gene Na(+)/H(+) exchanger beta-like Neighboring gene fatty acid-binding protein 10-A, liver basic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in olfactory behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of flagellated sperm motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to odorant IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sperm midpiece IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cilia- and flagella-associated protein 69

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066835.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    18609480..18613514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051068373.1 → XP_050924330.1  cilia- and flagella-associated protein 69

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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