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mkxa mohawk homeobox a [ Lates calcarifer (barramundi perch) ]

Gene ID: 108898319, updated on 10-Apr-2024

Summary

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Gene symbol
mkxa
Gene description
mohawk homeobox a
See related
EnsemblRapid:ENSLCAG00010027763
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
mkx
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG24
Exon count:
7
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG24 NC_066856.1 (2907634..2934677, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365950.1 (1905703..1932777, complement)

Linkage Group LG24 - NC_066856.1Genomic Context describing neighboring genes Neighboring gene integrin, beta 1a Neighboring gene RAB18A, member RAS oncogene family Neighboring gene outer dynein arm docking complex subunit 2 Neighboring gene MAGUK p55 scaffold protein 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mohawk homeobox a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066856.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    2907634..2934677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018698283.2 → XP_018553799.1  mohawk homeobox a

    UniProtKB/TrEMBL
    A0A4W6G7S3, A0A4W6G8P8
    Related
    ENSLCAP00010059598.1, ENSLCAT00010061214.2
Nucleotide Protein
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Gene LinkOut

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