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nfyba nuclear transcription factor Y, beta a [ Lates calcarifer (barramundi perch) ]

Gene ID: 108897515, updated on 10-Apr-2024

Summary

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Gene symbol
nfyba
Gene description
nuclear transcription factor Y, beta a
See related
EnsemblRapid:ENSLCAG00010018258
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
nfyb
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
9
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG18 NC_066850.1 (16845824..16850783, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365869.1 (1410781..1415728, complement)

Linkage Group LG18 - NC_066850.1Genomic Context describing neighboring genes Neighboring gene muskelin 1, intracellular mediator containing kelch motifs Neighboring gene podocalyxin-like Neighboring gene carbohydrate (chondroitin 4) sulfotransferase 11 Neighboring gene solute carrier family 41 member 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y, beta a
Names
nuclear transcription factor Y subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066850.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    16845824..16850783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018697200.2 → XP_018552716.1  nuclear transcription factor Y, beta a isoform X2

    UniProtKB/TrEMBL
    A0A4W6END5

  2. XM_018697197.2 → XP_018552713.1  nuclear transcription factor Y, beta a isoform X1

    UniProtKB/TrEMBL
    A0A4W6END5, A0A4W6ENG0
    Related
    ENSLCAP00010039094.1, ENSLCAT00010040015.2

  3. XM_018697199.2 → XP_018552715.1  nuclear transcription factor Y, beta a isoform X1

    UniProtKB/TrEMBL
    A0A4W6END5, A0A4W6ENG0

  4. XM_018697198.2 → XP_018552714.1  nuclear transcription factor Y, beta a isoform X1

    UniProtKB/TrEMBL
    A0A4W6END5, A0A4W6ENG0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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