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ddx56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108895467, updated on 10-Apr-2024

Summary

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Gene symbol
ddx56
Gene description
DEAD (Asp-Glu-Ala-Asp) box helicase 56
See related
EnsemblRapid:ENSLCAG00010020486
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
14
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG9 NC_066841.1 (945767..950094, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363834.1 (389282..393604)

Linkage Group LG9 - NC_066841.1Genomic Context describing neighboring genes Neighboring gene posterior neuron-specific homeobox Neighboring gene AE binding protein 1a Neighboring gene dual specificity protein phosphatase 26 Neighboring gene peptidylprolyl isomerase Ab (cyclophilin A)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX56
Names
DEAD-box helicase 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066841.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    945767..950094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018694311.2 → XP_018549827.1  probable ATP-dependent RNA helicase DDX56

    UniProtKB/TrEMBL
    A0A4W6F2D9, A0A4W6F2E4
    Related
    ENSLCAP00010043972.1, ENSLCAT00010045064.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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