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aspn asporin (LRR class 1) [ Lates calcarifer (barramundi perch) ]

Gene ID: 108889782, updated on 10-Apr-2024

Summary

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Gene symbol
aspn
Gene description
asporin (LRR class 1)
See related
EnsemblRapid:ENSLCAG00010004529
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG12
Exon count:
8
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG12 NC_066844.1 (4725740..4738587)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364470.1 (196082..209512)

Linkage Group LG12 - NC_066844.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127143102 Neighboring gene inositol 1,3,4,5,6-pentakisphosphate 2-kinase Neighboring gene centromere protein P Neighboring gene extracellular matrix protein 2, female organ and adipocyte specific Neighboring gene osteoglycin, paralog a Neighboring gene nucleolar protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
asporin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066844.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    4725740..4738587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018686410.2 → XP_018541926.1  asporin

    UniProtKB/TrEMBL
    A0A4W6CDN0
    Related
    ENSLCAP00010009432.1, ENSLCAT00010009647.2
Nucleotide Protein
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Gene LinkOut

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