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abcb4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108889588, updated on 10-Apr-2024

Summary

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Gene symbol
abcb4
Gene description
ATP-binding cassette, sub-family B (MDR/TAP), member 4
See related
EnsemblRapid:ENSLCAG00010002393
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
abcb1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
28
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG15 NC_066847.1 (12377410..12391092)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364443.1 (203865..217556)

Linkage Group LG15 - NC_066847.1Genomic Context describing neighboring genes Neighboring gene DBF4-CDC7 kinase regulatory subunit Neighboring gene solute carrier family 25 member 40 Neighboring gene RUN domain containing 3b Neighboring gene uncharacterized LOC108889593 Neighboring gene carnitine O-octanoyltransferase Neighboring gene acyl-CoA binding domain containing 7 Neighboring gene ribonuclease P/MRP 38 subunit Neighboring gene N-myristoyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette, sub-family B (MDR/TAP), member 4
Names
ATP binding cassette subfamily B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066847.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    12377410..12391092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018686132.2 → XP_018541648.1  ATP-binding cassette, sub-family B (MDR/TAP), member 4

    UniProtKB/TrEMBL
    A0A4W6C721, A0A4W6CFC5
    Related
    ENSLCAP00010009685.1, ENSLCAT00010009903.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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