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LOC108889488 sodium- and chloride-dependent taurine transporter [ Lates calcarifer (barramundi perch) ]

Gene ID: 108889488, updated on 11-Apr-2024

Summary

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Gene symbol
LOC108889488
Gene description
sodium- and chloride-dependent taurine transporter
See related
EnsemblRapid:ENSLCAG00010015579
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
slc6a6
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Genomic context

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Location:
chromosome: LG6
Exon count:
15
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG6 NC_066838.1 (17407788..17424384, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364425.1 (954283..970856, complement)

Linkage Group LG6 - NC_066838.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor-interacting protein 2 Neighboring gene ribosomal protein L32 Neighboring gene deoxyribonuclease-1 Neighboring gene ankyrin repeat and BTB (POZ) domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables taurine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in taurine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent taurine transporter
Names
solute carrier family 6 member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066838.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    17407788..17424384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018685945.2 → XP_018541461.1  sodium- and chloride-dependent taurine transporter isoform X2

    UniProtKB/TrEMBL
    A0A4W6E563, A0A4W6E568
    Related
    ENSLCAP00010078976.1, ENSLCAT00010066335.1

  2. XM_018685944.2 → XP_018541460.1  sodium- and chloride-dependent taurine transporter isoform X1

    UniProtKB/TrEMBL
    A0A4W6E568
    Related
    ENSLCAP00010073027.1, ENSLCAT00010072423.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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