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tab1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108889064, updated on 10-Apr-2024

Summary

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Gene symbol
tab1
Gene description
TGF-beta activated kinase 1/MAP3K7 binding protein 1
See related
EnsemblRapid:ENSLCAG00010008050
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
11
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG5 NC_066837.1 (3977157..3993780)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364309.1 (460588..477329)

Linkage Group LG5 - NC_066837.1Genomic Context describing neighboring genes Neighboring gene synaptogyrin-1 Neighboring gene intraflagellar transport 27 homolog (Chlamydomonas) Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase b Neighboring gene C1q and TNF related 6b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066837.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    3977157..3993780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018685364.2 → XP_018540880.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4W6CX27
    Related
    ENSLCAP00010016962.2, ENSLCAT00010017324.2

  2. XM_018685367.2 → XP_018540883.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4W6CX27

  3. XM_018685363.2 → XP_018540879.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4W6CX27

  4. XM_018685365.2 → XP_018540881.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4W6CX27
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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