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ramac RNA guanine-7 methyltransferase activating subunit [ Lates calcarifer (barramundi perch) ]

Gene ID: 108887934, updated on 10-Apr-2024

Summary

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Gene symbol
ramac
Gene description
RNA guanine-7 methyltransferase activating subunit
See related
EnsemblRapid:ENSLCAG00010004975
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
rammet; fam103a1
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Genomic context

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Location:
chromosome: LG2
Exon count:
4
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG2 NC_066834.1 (6875763..6879419, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364165.1 (5423421..5426730)

Linkage Group LG2 - NC_066834.1Genomic Context describing neighboring genes Neighboring gene transmembrane 6 superfamily member 1 Neighboring gene BTB/POZ domain-containing protein 1 Neighboring gene homer scaffold protein 2 Neighboring gene WASP homolog associated with actin, golgi membranes and microtubules Neighboring gene fibronectin type III and SPRY domain-containing protein 2 Neighboring gene KH homology domain-containing protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA 5'-cap (guanine-N7)-methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA guanine-N7 methyltransferase activating subunit
Names
RNMT activating mRNA cap methyltransferase subunit
family with sequence similarity 103 member A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066834.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    6875763..6879419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051074620.1 → XP_050930577.1  RNA guanine-N7 methyltransferase activating subunit isoform X2

  2. XM_018683640.2 → XP_018539156.1  RNA guanine-N7 methyltransferase activating subunit isoform X1

    UniProtKB/TrEMBL
    A0A4W6CHJ7
    Related
    ENSLCAP00010010421.2, ENSLCAT00010010652.2
Nucleotide Protein
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Gene LinkOut

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