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LOC108887268 frizzled-6 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108887268, updated on 10-Apr-2024

Summary

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Gene symbol
LOC108887268
Gene description
frizzled-6
See related
EnsemblRapid:ENSLCAG00010015284
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
fzd6
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Genomic context

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Location:
chromosome: LG15
Exon count:
10
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG15 NC_066847.1 (30152199..30162041)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363830.1 (2294653..2304489, complement)

Linkage Group LG15 - NC_066847.1Genomic Context describing neighboring genes Neighboring gene MMS22-like, DNA repair protein Neighboring gene kelch-like family member 32 Neighboring gene collagen triple helix repeat-containing protein 1 Neighboring gene mitochondrial folate transporter/carrier

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
frizzled-6
Names
frizzled class receptor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066847.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    30152199..30162041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018682578.2 → XP_018538094.1  frizzled-6

    UniProtKB/TrEMBL
    A0A4W6E1T4

  2. XM_018682573.2 → XP_018538089.1  frizzled-6

    UniProtKB/TrEMBL
    A0A4W6E1T4
    Related
    ENSLCAP00010032474.1, ENSLCAT00010033229.2

  3. XM_018682587.2 → XP_018538103.1  frizzled-6

    UniProtKB/TrEMBL
    A0A4W6E1T4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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