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cracr2b calcium release activated channel regulator 2B [ Lates calcarifer (barramundi perch) ]

Gene ID: 108886711, updated on 10-Apr-2024

Summary

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Gene symbol
cracr2b
Gene description
calcium release activated channel regulator 2B
See related
EnsemblRapid:ENSLCAG00010013911
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See cracr2b in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
18
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG10 NC_066842.1 (11002831..11011800)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363830.1 (1381553..1390701, complement)

Linkage Group LG10 - NC_066842.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 258 Neighboring gene transmembrane protein 138 Neighboring gene CD151 molecule Neighboring gene glutamine amidotransferase class 1 domain containing 1 Neighboring gene chitinase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi vesicle fusion to target membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EF-hand calcium-binding domain-containing protein 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066842.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    11002831..11011800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018681715.2 → XP_018537231.1  EF-hand calcium-binding domain-containing protein 4A isoform X1

    Related
    ENSLCAP00010029606.2, ENSLCAT00010030260.2

  2. XM_018681728.2 → XP_018537244.1  EF-hand calcium-binding domain-containing protein 4A isoform X2

  3. XM_051073336.1 → XP_050929293.1  EF-hand calcium-binding domain-containing protein 4A isoform X1

  4. XM_018681721.2 → XP_018537237.1  EF-hand calcium-binding domain-containing protein 4A isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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