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mars1 methionyl-tRNA synthetase 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108884823, updated on 10-Apr-2024

Summary

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Gene symbol
mars1
Gene description
methionyl-tRNA synthetase 1
See related
EnsemblRapid:ENSLCAG00010016732
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
mars
Orthologs
human zebrafish all
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Genomic context

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See mars1 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
22
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG12 NC_066844.1 (26301652..26316710, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363902.1 (842287..857382)

Linkage Group LG12 - NC_066844.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 5A, b Neighboring gene uncharacterized LOC127143079 Neighboring gene dynactin 2 (p50) Neighboring gene DNA-damage-inducible transcript 3 Neighboring gene Rho GTPase activating protein 9 Neighboring gene uncharacterized LOC108884831 Neighboring gene zinc finger E-box-binding homeobox 2-like Neighboring gene GLI family zinc finger 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methionine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methionyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aminoacyl-tRNA synthetase multienzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: methionine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066844.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    26301652..26316710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018678910.2 → XP_018534426.1  LOW QUALITY PROTEIN: methionine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    A0A4W6EFP3
    Related
    ENSLCAP00010036081.1, ENSLCAT00010036929.2
Nucleotide Protein
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Gene LinkOut

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