U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rb1cc1 RB1-inducible coiled-coil 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108883370, updated on 10-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
rb1cc1
Gene description
RB1-inducible coiled-coil 1
See related
EnsemblRapid:ENSLCAG00010005128
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rb1cc1 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
24
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG4 NC_066836.1 (10311411..10326109)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363888.1 (2173625..2188316)

Linkage Group LG4 - NC_066836.1Genomic Context describing neighboring genes Neighboring gene gastrulation brain homeobox 1 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 Neighboring gene ST18 C2H2C-type zinc finger transcription factor Neighboring gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reticulophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RB1-inducible coiled-coil protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066836.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10311411..10326109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018676403.2 → XP_018531919.1  RB1-inducible coiled-coil protein 1

    UniProtKB/TrEMBL
    A0A4W6CGS5, A0A4W6CGT5
    Related
    ENSLCAP00010010902.2, ENSLCAT00010011138.2

  2. XM_018676402.2 → XP_018531918.1  RB1-inducible coiled-coil protein 1

    UniProtKB/TrEMBL
    A0A4W6CGS5, A0A4W6CGT5
    Related
    ENSLCAP00010010863.2, ENSLCAT00010011098.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.