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cdk5 cyclin-dependent kinase 5 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108883365, updated on 10-Apr-2024

Summary

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Gene symbol
cdk5
Gene description
cyclin-dependent kinase 5
See related
EnsemblRapid:ENSLCAG00010004830
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
12
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG4 NC_066836.1 (10070087..10077411)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363888.1 (1932286..1939616)

Linkage Group LG4 - NC_066836.1Genomic Context describing neighboring genes Neighboring gene autophagy related 9B Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 8 Neighboring gene acid-sensing (proton-gated) ion channel 1c Neighboring gene zgc:92591

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-dependent-like kinase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066836.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10070087..10077411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018676383.2 → XP_018531899.1  cyclin-dependent-like kinase 5

    UniProtKB/TrEMBL
    A0A4W6C899, A0A4W6CFK2
    Related
    ENSLCAP00010010142.1, ENSLCAT00010010368.2
    Conserved Domains (1) summary
    cd07839
    Location:3 → 286
    STKc_CDK5; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5
Nucleotide Protein
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