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ikbkb inhibitor of nuclear factor kappa B kinase subunit beta [ Lates calcarifer (barramundi perch) ]

Gene ID: 108881598, updated on 10-Apr-2024

Summary

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Gene symbol
ikbkb
Gene description
inhibitor of nuclear factor kappa B kinase subunit beta
See related
EnsemblRapid:ENSLCAG00010002901
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
22
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (4315549..4333668)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363822.1 (4315537..4333681)

Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene B-cell linker protein Neighboring gene plasminogen activator, tissue Neighboring gene voltage-dependent anion channel 3 Neighboring gene enkurin domain containing 1 Neighboring gene polymerase (DNA directed), beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables IkappaB kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of IkappaB kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit beta
Names
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    4315549..4333668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018673653.2 → XP_018529169.1  LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit beta

    UniProtKB/TrEMBL
    A0A4W6BY08
    Related
    ENSLCAP00010005949.1, ENSLCAT00010006100.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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