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rnf11b ring finger protein 11b [ Lates calcarifer (barramundi perch) ]

Gene ID: 108881372, updated on 10-Apr-2024

Summary

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Gene symbol
rnf11b
Gene description
ring finger protein 11b
See related
EnsemblRapid:ENSLCAG00010028402
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
rnf11
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
3
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (12622289..12638565, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363859.1 (5914641..5930915)

Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene Fas (TNFRSF6) associated factor 1 Neighboring gene cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) Neighboring gene tetratricopeptide repeat domain 39A Neighboring gene epidermal growth factor receptor pathway substrate 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RING finger protein 11b
Names
ring finger protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    12622289..12638565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018673341.2 → XP_018528857.1  RING finger protein 11b

    UniProtKB/TrEMBL
    A0A4W6G2T3
    Related
    ENSLCAP00010081958.1, ENSLCAT00010085484.1
    Conserved Domains (1) summary
    cd16468
    Location:98 → 140
    RING-H2_RNF11; RING finger, H2 subclass, found in RING finger protein 11 (RNF11) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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