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tmem38a transmembrane protein 38A [ Lates calcarifer (barramundi perch) ]

Gene ID: 108881180, updated on 10-Apr-2024

Summary

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Gene symbol
tmem38a
Gene description
transmembrane protein 38A
See related
EnsemblRapid:ENSLCAG00010005277
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
6
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (18084926..18094661, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363859.1 (458365..468283)

Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene CREB regulated transcription coactivator 1b Neighboring gene cartilage oligomeric matrix protein Neighboring gene protein NLRC3-like Neighboring gene small integral membrane protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trimeric intracellular cation channel type A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    18084926..18094661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018673009.2 → XP_018528525.1  trimeric intracellular cation channel type A

    UniProtKB/TrEMBL
    A0A4W6CH86
    Related
    ENSLCAP00010082535.1, ENSLCAT00010075028.1
Nucleotide Protein
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Gene LinkOut

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