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dmd dystrophin [ Lates calcarifer (barramundi perch) ]

Gene ID: 108880219, updated on 10-Apr-2024

Summary

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Gene symbol
dmd
Gene description
dystrophin
See related
EnsemblRapid:ENSLCAG00010018159
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See dmd in Genome Data Viewer
Location:
chromosome: LG7_2
Exon count:
86
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG7_2 NC_066854.1 (11995411..12282129)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367513.1 (487689..779486)

Linkage Group LG7_2 - NC_066854.1Genomic Context describing neighboring genes Neighboring gene cilia- and flagella-associated protein 47-like Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transmembrane protein 47 Neighboring gene uncharacterized LOC127139109 Neighboring gene uncharacterized LOC108880192 Neighboring gene adenosine receptor A1 Neighboring gene uncharacterized LOC108880210 Neighboring gene general transcription factor IIIC, polypeptide 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synaptic signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dystrophin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066854.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    11995411..12282129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018671655.2 → XP_018527171.1  dystrophin isoform X2

    UniProtKB/TrEMBL
    A0A4W6EU26
    Related
    ENSLCAP00010041841.1, ENSLCAT00010042884.2

  2. XM_051065872.1 → XP_050921829.1  dystrophin isoform X5

    Related
    ENSLCAP00010041832.2, ENSLCAT00010042875.2

  3. XM_051065871.1 → XP_050921828.1  dystrophin isoform X4

    Related
    ENSLCAP00010041907.2, ENSLCAT00010042951.2

  4. XM_051065869.1 → XP_050921826.1  dystrophin isoform X1

  5. XM_051065870.1 → XP_050921827.1  dystrophin isoform X3

  6. XM_051065873.1 → XP_050921830.1  dystrophin isoform X6

  7. XM_018671649.2 → XP_018527165.2  dystrophin isoform X7

    Related
    ENSLCAP00010041970.2, ENSLCAT00010043014.2

  8. XM_018671654.2 → XP_018527170.1  dystrophin isoform X8

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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