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loxl2b lysyl oxidase-like 2b [ Lates calcarifer (barramundi perch) ]

Gene ID: 108878633, updated on 10-Apr-2024

Summary

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Gene symbol
loxl2b
Gene description
lysyl oxidase-like 2b
See related
EnsemblRapid:ENSLCAG00010027448
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
loxl2
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
15
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (20610459..20653063, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367222.1 (3482047..3524650)

Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene secreted frizzled-related protein 1a Neighboring gene golgin subfamily A member 7 Neighboring gene lysosomal membrane ascorbate-dependent ferrireductase CYB561A3 Neighboring gene hematopoietic death receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-lysine 6-oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysyl oxidase homolog 2b
Names
lysyl oxidase like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    20610459..20653063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018669535.2 → XP_018525051.1  lysyl oxidase homolog 2b

    UniProtKB/TrEMBL
    A0A4W6G541
    Related
    ENSLCAP00010058906.2, ENSLCAT00010060512.2

  2. XM_051075116.1 → XP_050931073.1  lysyl oxidase homolog 2b

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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