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LOC108874422 interleukin-1 receptor accessory protein [ Lates calcarifer (barramundi perch) ]

Gene ID: 108874422, updated on 10-Apr-2024

Summary

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Gene symbol
LOC108874422
Gene description
interleukin-1 receptor accessory protein
See related
EnsemblRapid:ENSLCAG00010019780
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
il1rap
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG21
Exon count:
13
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG21 NC_066853.1 (675344..699604, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366834.1 (54367..78641, complement)

Linkage Group LG21 - NC_066853.1Genomic Context describing neighboring genes Neighboring gene geminin coiled-coil domain containing Neighboring gene uncharacterized LOC108874423 Neighboring gene fibroblast growth factor 12 Neighboring gene nucleotidyltransferase MB21D2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interleukin-1 receptor accessory protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066853.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    675344..699604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018662866.2 → XP_018518382.1  interleukin-1 receptor accessory protein

    UniProtKB/TrEMBL
    A0A4W6ESV5, A0A4W6EY81
    Related
    ENSLCAP00010066770.1, ENSLCAT00010094081.1

RNA

  1. XR_007808881.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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